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研究者情報

 

基本情報

 
研究者名(漢字)
河邊 昭
 
研究者名(カナ)
カワベ アキラ
 
研究者名(ローマ字)
KAWABE AKIRA
 
メールアドレス(問合せ用)
akiraka@cc.kyoto-su.ac.jp
 
 

研究者基礎データ

 

研究職歴

2001-2002:日本学術振興会 特別研究員(DC2)京都大学
2002-2003:日本学術振興会 特別研究員(PD)国立遺伝学研究所
2003-2004:大阪大学工学研究科 博士研究員
2004-2007:エジンバラ大学進化生物学研究所 博士研究員
2007-2010:日本学術振興会 特別研究員(PD)国立遺伝学研究所
2010-  :京都産業大学総合生命科学部 准教授
 

所属部署名

総合生命科学部生命資源環境学科
 

職名

准教授 
 

出身大学院

1.京都大学  農学研究科  

2.京都大学  農学研究科  

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出身学校

京都大学  農学部  
 

研究テーマ

1.シロイヌナズナ近縁種の動原体の進化機構  遺伝・ゲノム動態     

2.シロイヌナズナとその近縁種におけるDNA多型の研究  遺伝・ゲノム動態 育種学    

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研究者活動データ

 

取得学位名

1.博士(農学) 京都大学  

2.農学修士 京都大学  

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学会

1.英国遺伝学会   

2.日本進化学会   

3.日本遺伝学会   

全て表示する(3件)

受賞学術賞

日本遺伝学会奨励賞 2015 国内 
 

論文

1. Characterization of a heat-activated retrotransposon in Vigna angularis Breeding Science
 Masuta Y, Kawabe A, Nozawa K, Naito K, Kato A, Ito H    2017  

2.10.3390/epigenomes1010007 Epigenetic Regulation of Heat-Activated Retrotransposon in Cruciferous Vegetables. Epigenomes Nozawa K, Kawagishi Y, Kawabe A, Sato M, Masuta Y, Kato A, Ito H 1  7 2017  

3.10.1266/ggs.16-00039 Analysis of nuclear mitochondrial DNAs and the factors affecting patterns of integration in plant species
 Genes and Genetic Systems Yoshida T, Kawabe A 92  27-33 2017  

4.10.1266/ggs.16-00045 Characterization of a heat-activated retrotransposon in natural accessions of Arabidopsis thaliana
 Genes and Genetic Systems Masuda S, Nozawa K, Matsunaga W, Masuta Y, Kawabe A, Kato A, Ito H 91  293-299 2016  

5.10.1266/ggs.15-00055 Gene duplication, silencing and expression alteration govern the molecular evolution of PRC2 genes in plants Genes and Genetic Systems Furihata HY, Suenaga K, Kawanabe T, Yoshida T, Kawabe A 91 2 85-95 2016  

6.10.5511/plantbiotechnology.15.1214a Zinc accumulation and vegetation ecology in the allotetraploid, Arabidopsis kamchatica ssp. kawasakiana
 Plant Biotechnology
 Kosugi A, Nishizawa C, Kawabe A, Harada E
 33  33-37 2016  

7.10.1071/BT14242 Metal accumulation by Arabidopsis halleri subsp. gemmifera at a limestone mining site
 Australian J. Botany Kosugi A, Tamaru J, Gotou K, Furihata HY, Shimizu A, Kawabe A, Harada E
 63 2 134-140 2015  

8.10.1093/dnares/dst045 Patterns of genomic integration of nuclear chloroplast DNA fragments in plant species
 DNA Research Yoshida T, Furihata HY, Kawabe A 21  127-140 2014  

9.10.1371/journal.pone.0073588 Importance of Gene Duplication in the Evolution of Genomic Imprinting Revealed by Molecular Evolutionary Analysis of the Type I MADS-Box Gene Family in Arabidopsis Species PLOS One Yoshida T, Kawabe A. 8   e73588 2013  

10.10.1038/emboj.2013.169 Mobilization of a plant transposon by expression of the transposon-encoded anti-silencing factor. EMBO J. Fu Y, Kawabe A, Etcheverry M, Ito T, Toyoda A, Fujiyama A, Colot V, Tarutani Y, Kakutani T. 32  2407-2417 2013  

11.10.1016/j.gene.2013.01.034 Evolution of the ONSEN retrotransposon family activated upon heat stress in Brassicaceae Gene Ito H, Yoshida T, Tsukahara S, Kawabe A. 518  256-261 2013  

12. シロイヌナズナにおけるDNAメチル化とトランスポゾン制御 実験医学 河邊昭、角谷徹仁 27  3075-3079 2009  

13. 「short topics インプリント遺伝子MEDEAの進化パターン」監修 島本功 飯田滋 角谷徹二 細胞工学別冊 植物細胞工学シリーズ24 「植物のエピジェネティックス」 秀潤社 河邊昭   152-155 2008  

14. 「short topics シロイヌナズナの近縁種に見られる染色体構造の進化」監修 清水健太郎、長谷部光泰 細胞工学別冊 植物細胞工学シリーズ23 「植物の進化 -基本概念からモデル生物を活用した比較・進化ゲノム学まで-」 秀潤社 河邊昭    2007  

15. Dynamics of the plant Aurora kinase AtAUR3 during mitosis and spindle abnormality induced by AtAUR3 overexpression. Cytologia  cover and technical note, p. ii   2005  

16. Phylogenetic relationship among the section Stenophora in the genus Dioscorea based on the DNA variation at the Pgi locus. Dioscorea Research Kawabe A 1  59-63 1998  

17.10.1101/gad.183871.111. Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata Genes and Development Tsukahara S, Kawabe A, Kobayashi A, Ito T, Aizu T, Shin-i T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T. 26  705-713 2012  

18.10.1038/nature08351 Bursts of retrotransposition reproduced in Arabidopsis. Nature Tsukahara S, Kobayashi A, Kawabe A, Mathieu O, Miura A, Kakutani T. 461  423-426 2009  

19.10.1371/journal.pone.0002411 Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata. PLoS One Ross-Ibarra J, Wright SI, Foxe JP, Kawabe A, DeRose-Wilson L, Gos G, Charlesworth D, Gaut BS. 3  e2411 2008  

20.10.1534/genetics.107.085282 High DNA sequence diversity in pericentromeric genes of the plant Arabidopsis lyrata. Genetics Kawabe A, Forrest A, Wright SI, Charlesworth D. 179  985-995 2008  

21.10.1371/journal.pgen.1000048 Evolution and control of imprinted FWA genes in the genus Arabidopsis. PLoS Genetics Fujimoto R, Kinoshita Y, Kawabe A, Kinoshita T, Takashima K, Nordborg M, Nasrallah ME, Shimizu KK, Kudoh H, Kakutani T. 4  e100048 2008  

22.10.1016/j.cub.2007.09.051 High diversity due to balancing selection in the promoter region of the Medea gene in Arabidopsis lyrata. Current Biology Kawabe A, Fujimoto R, Charlesworth D. 17  1885-1889 2007  

23.10.1093/pcp/pcl064  Characterization of a splicing variant of plant Aurora kinase. Plant Cell and Physiology Kurihara D, Kawabe A, Matsunaga S, Nakagawa K, Fujimoto S, Uchiyama S, Fukui K. 48  369-374 2007  

24.10.1534/genetics.106.063628 Duplication of centromeric histone H3 (HTR12) gene in Arabidopsis halleri and lyrata, plant species with multiple centromeric satellite sequences. Genetics Kawabe A, Nasuda S, Charlesworth D. 174  2021-2032 2006  

25.10.1007/s00239-006-0097-8 Patterns of DNA variation among three centromere satellite families in Arabidopsis halleri and lyrata. Journal of Molecular Evolution Kawabe A, Charlesworth D. 64  237-247 2007  

26.10.1534/genetics.106.062588 Testing for the effects of recombination rate on nucleotide diversity in natural populations of Arabidopsis lyrata. Genetics Wright SI, Foxe JP, DeRose-Wilson L, Kawabe A, Looseley M, Gaut BS, Charlesworth D. 174  1421-1430 2006  

27.10.1111/j.1365-313X.2006.02893.x Aurora kinase is required for proper chromosome segregation in tobacco BY-2 cells. The Plant Journal Kurihara D, Matsunaga S, Kawabe A, Fujimoto S, Noda M, Uchiyama S, Fukui K. 48  572-580 2006  

28.10.1266/ggs.81.287 Chromosome-specific satellite sequences of Turritius glabra. Genes and Genetic Systems Kawabe A, Nasuda S. 81  287-290 2006  

29.10.1017/S0016672306008287 Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genetical Research Kawabe A, Hansson B, Forrest A, Hagenblad J, Charlesworth D. 88  45-56 2006  

30.10.1534/genetics.106.057182 Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana. Genetics Kawabe A, Hansson B, Hagenblad J, Forrest A, Charlesworth D. 173  1613-1619 2006  

31.10.1017/S0016672306008020 Comparative gene mapping in Arabidopsis lyrata chromosomes 1 and 2 and the corresponding A. thaliana chromosome 1: recombination rates, rearrangements and centromere location. Genetical Research Hansson B, Kawabe A, Preuss S, Kuittinen H, Charlesworth D. 87  75-85 2006  

32.10.1007/s10709-005-0718-y Polymorphic chromosomal specificity of centromere satellite families in Arabidopsis halleri ssp. gemmifera. Genetica Kawabe A, Nasuda S. 126  335-342 2006  

33.10.1111/j.1471-8286.2005.01033.x A simple method to score single nucleotide polymorphisms based on allele-specific PCR and primer-induced fragment length variation. Molecular Ecology Notes Hansson B, Kawabe A
 5  692-696 2005  

34.10.1007/s11103-005-3454-x Characterization of plant Aurora kinases during mitosis. Plant Molecular Biology Kawabe A, Matsunaga S, Nakagawa K, Kurihara D, Yoneda A, Hasezawa S, Uchiyama S, Fukui K. 58  1-13 2005  

35.10.1007/s00438-004-1081-x Structure and genomic organization of centromeric repeats in Arabidopsis species. Molecular Genetics and Genomics Kawabe A, Nasuda S. 272  593-602 2005  

36.10.1073/pnas.0401782101  Inter-locus nonrandom association of polymorphisms in Drosophila chemoreceptor genes. Proceeding of National Academy of Science USA Takano-Shimizu T, Kawabe A, Inomata N, Nanba N, Kondo R, Inoue Y, Itoh M. 101  14156-14161 2004  

37.JST.JSTAGE/plantbiotechnology/21.303 Application of the bioactive beads methods in rice transformation. Plant Biotechnology Liu H, Kawabe A, Matsunaga S, Kobayashi A, Harashima S, Uchiyama S, Ohmido N, Fukui K
 21  303-306 2004  

38.10.1508/cytologia.69.235 An Arabidopsis thaliana gene on the yeast artificial chromosome can be transcribed in tobacco cells. Cytologia Liu H, Kawabe A, Matsunaga S, Kim YH, Higashi T, Uchiyama S, Harashima S, Kobayashi A, Fukui K
 69  235-240 2004  

39.10.1007/s10265-003-0141-3 Obtainment of transgenic plants using the bio-active beads method. Journal of Plant Research Liu H, Kawabe A, Matsunaga S, Murakawa T, Mizukami A, Yanagisawa M, Nagamori E, Harashima S, Kobayashi A, Fukui K. 117  95-99 2004  

40.10.1007/s00438-003-0943-y Genomic localization of endogenous mobile CACTA family transposons in natural variants of Arabidopsis thaliana. Molecular Genetics and Genomics Miura A, Kato M, Watanabe K, Kawabe A, Kotani H, Kakutani T. 270  524-532 2004  

41.10.1266/ggs.78.343 Patterns of codon usage bias in three dicot and four monocot plant species. Genes and Genetic systems Kawabe A, Miyashita NT. 78  343-352 2003  

42.10.1093/molbev/msg124 DNA polymorphism in active gene and pseudogene of the cytosolic phosphoglucose isomerase (PgiC) loci in Arabidopsis halleri ssp. gemmifera. Molecular Biology and Evolution Kawabe A, Miyashita NT. 20  1043-1050 2003  

43.10.1266/ggs.78.11 DNA polymorphism at the ACAULIS5 locus of the wild plant Arabidopsis thaliana. Genes and Genetic Systems Yoshida K, Kamiya T, Kawabe A, Miyashita NT. 78  11-21 2003  

44.10.1017}S0016672302005815 Nucleotide polymorphism at the Atmyb2 locus of the wild plant Arabidopsis thaliana. Genetical Research Kamiya T, Kawabe A, Miyashita NT. 80  89-98 2002  

45. Molecular cloning, sequencing, and chromosome mapping of a 1A-encoded w-type prolamin sequence from wheat. Genome Masoudi-Nejad A, Nasuda S, Kawabe A, Endo TR. 45  661-669 2002  

46.10.1266/ggs.77.167 DNA variation in the acidic chitinase locus (ChiA) region in Arabis gemmifera and its related species. Genes and Genetic Systems Kawabe A, Miyashita NT. 77  167-175 2002  

47.10.1266/ggs.77.159 Characterization of duplicated two cytosolic phosphoglucose isomerase (PgiC) loci in Arabidopsis halleri ssp. gemmifera. Genes and Genetic Systems Kawabe A, Miyashita NT. 77  159-165 2002  

48. DNA polymorphism at the cytosolic phosphoglucose isomerase (PgiC) locus of the wild plant Arabidopsis thaliana. Genetics Kawabe A, Yamane K, Miyashita NT. 156  1339-1347 2000  

49. DNA variation in the basic chitinase locus (ChiB) region of the wild plant Arabidopsis thaliana. Genetics Kawabe A, Miyashita NT. 153  1445-1453 1999  

50. DNA variation in the wild plant Arabidopsis thaliana revealed by amplified fragment length polymorphism (AFLP) analysis. Genetics Miyashita NT, Kawabe A, Innan H. 152  1723-1731 1999  

51. Intra- and interspecific DNA variation and codon bias of the alcohol dehydrogenase (Adh) locus in Arabis and Arabidopsis species. Molecular Biology and Evolution Miyashita NT, Kawabe A, Innan H, Terauchi R. 15  1420-1429 1998  

52. Nucleotide polymorphism in the acidic chitinase locus (ChiA) region of the wild plant Arabidopsis thaliana. Molecular Biology and Evolution Kawabe A, Innan H, Terauchi R, Miyashita NT. 14  1303-1315 1997  

53.10.1266/ggs.72.253 Phylogenetic relationship among the section Stenophora in the genus Dioscorea based on the analysis of nucleotide sequence variation in the phosphoglucose isomerase (Pgi) locus. Genes and Genetic Systems  72  253-262 1997  

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